我正在使用 LaTeX 模板制作我的硕士论文，在附录表格中遇到了以下问题。
在tese.tex文档设置的位置我有以下内容：
\begin{appendices}
\begin{appendix}
\pagenumbering{bychapter}
\input{Appendices/appendixA.tex}
\cleardoublepage
\end{appendix}
\end{appendices}
并且appendixA.tex：
\fancychapter{Title of AppendixA}
\label{ap:a}
然后在我的介绍中例如我写道\ref{ap:a}，一切都运行正常。
例如，当我将表格添加到附录时，就会出现问题
\begin{table}[]
\centering
\caption{My caption}
\label{my-label}
\begin{tabular}{lll}
& & \\
& & \\
& &
\end{tabular}
\end{table}
现在如果尝试做\ref{ap:a}我就会得到Reference `ap:a' on page 4 undefined。
其他重要的事情是，我可以参考表格（做\ref{my-label}得很完美，如果添加另一个附录，让我们想象一下：
\begin{appendices}
\begin{appendix}
\pagenumbering{bychapter}
\input{Appendices/appendixA.tex}
\input{Appendices/appendixB.tex}
\cleardoublepage
\end{appendix}
\end{appendices}
其中appendixB.tex可能有一个副本appendixA.tex，但带有不同的标签，那么问题就会迁移到附录 B，并且我开始参考附录 A。
我在这里命名的所有示例文件以及其他配置和 tex 文件都在这个 GitHub 存储库。我创建了一个问题但到目前为止我什么也没得到。
更新
根据评论添加了文件列表添加\listfiles到序言中，我的.log有以下内容：
*File List*
01.thesis.cls 2011/08/23
report.cls 2014/09/29 v1.4h Standard LaTeX document class
size10.clo 2014/09/29 v1.4h Standard LaTeX file (size option)
indentfirst.sty 1995/11/23 v1.03 Indent first paragraph (DPC)
ifthen.sty 2014/09/29 v1.1c Standard LaTeX ifthen package (DPC)
ulem.sty 2012/05/18
graphicx.sty 2014/10/28 v1.0g Enhanced LaTeX Graphics (DPC,SPQR)
keyval.sty 2014/10/28 v1.15 key=value parser (DPC)
graphics.sty 2016/07/10 v1.0t Standard LaTeX Graphics (DPC,SPQR)
trig.sty 2016/01/03 v1.10 sin cos tan (DPC)
graphics.cfg 2016/06/04 v1.11 sample graphics configuration
pdftex.def 2016/07/10 v0.06j Graphics/color for pdfTeX
infwarerr.sty 2016/05/16 v1.4 Providing info/warning/error messages (HO)
ltxcmds.sty 2016/05/16 v1.23 LaTeX kernel commands for general use (HO)
epsf.sty
00.textpos.sty 2007/03/30 v1.7d
everyshi.sty 2001/05/15 v3.00 EveryShipout Package (MS)
helvet.sty 2005/04/12 PSNFSS-v9.2a (WaS)
amsmath.sty 2016/06/28 v2.15d AMS math features
amstext.sty 2000/06/29 v2.01 AMS text
amsgen.sty 1999/11/30 v2.0 generic functions
amsbsy.sty 1999/11/29 v1.2d Bold Symbols
amsopn.sty 2016/03/08 v2.02 operator names
amsthm.sty 2015/03/04 v2.20.2
amssymb.sty 2013/01/14 v3.01 AMS font symbols
amsfonts.sty 2013/01/14 v3.01 Basic AMSFonts support
00.Definitions/packages.tex
babel.sty 2016/04/23 3.9r The Babel package
bblopts.cfg 2005/09/08 v0.1 add Arabic and Farsi to "declared" options of b
abel
english.ldf 2012/08/20 v3.3p English support from the babel system
portuges.ldf 2008/03/18 v1.2q Portuguese support from the babel system
inputenc.sty 2015/03/17 v1.2c Input encoding file
utf8.def 2016/02/28 v1.1s UTF-8 support for inputenc
t1enc.dfu 2016/02/28 v1.1s UTF-8 support for inputenc
ot1enc.dfu 2016/02/28 v1.1s UTF-8 support for inputenc
omsenc.dfu 2016/02/28 v1.1s UTF-8 support for inputenc
fontenc.sty
t1enc.def 2016/06/19 v1.99m Standard LaTeX file
datetime.sty 2015/03/20 v2.60 Date Time Package
etoolbox.sty 2015/08/02 v2.2a e-TeX tools for LaTeX (JAW)
fmtcount.sty 2015/05/05 v3.01
xkeyval.sty 2014/12/03 v2.7a package option processing (HA)
xkeyval.tex 2014/12/03 v2.7a key=value parser (HA)
fcprefix.sty 2012/09/28
fcnumparser.sty 2012/09/28
ifxetex.sty 2010/09/12 v0.6 Provides ifxetex conditional
fc-english.def 2013/08/17
fc-portuges.def 2014/06/09
datetime-defaults.sty 2013/09/10
latexsym.sty 1998/08/17 v2.2e Standard LaTeX package (lasy symbols)
multirow.sty
colortbl.sty 2012/02/13 v1.0a Color table columns (DPC)
array.sty 2014/10/28 v2.4c Tabular extension package (FMi)
color.sty 2016/07/10 v1.1e Standard LaTeX Color (DPC)
color.cfg 2016/01/02 v1.6 sample color configuration
supertabular.sty 2004/02/20 v4.1e the supertabular environment
pdflscape.sty 2016/05/14 v0.11 Display of landscape pages in PDF (HO)
lscape.sty 2000/10/22 v3.01 Landscape Pages (DPC)
ifpdf.sty 2016/05/14 v3.1 Provides the ifpdf switch
epsfig.sty 1999/02/16 v1.7a (e)psfig emulation (SPQR)
subfigure.sty 2002/07/30 v2.1.4 subfigure package
subfigure.cfg
dcolumn.sty 2014/10/28 v1.06 decimal alignment package (DPC)
bm.sty 2016/07/07 v1.2b Bold Symbol Support (DPC/FMi)
booktabs.sty 2005/04/14 v1.61803 publication quality tables
rotating.sty 2016/05/22 v2.16c rotated objects in LaTeX
caption.sty 2016/02/21 v3.3-144 Customizing captions (AR)
caption3.sty 2016/05/22 v1.7-166 caption3 kernel (AR)
natbib.sty 2010/09/13 8.31b (PWD, AO)
acronym.sty 2015/03/21 v1.41 Support for acronyms (Tobias Oetiker)
suffix.sty 2006/07/15 1.5a Variant command support
xstring.sty 2013/10/13 v1.7c String manipulations (C Tellechea)
appendix.sty 2009/09/02 v1.2b extra appendix facilities
chappg.sty 2006/05/09 v2.1b page numbering by chapter number pages by chap
ter (or other unit)
00.extra_functions.sty
minitoc.sty 2015/07/13 v61 Package minitoc
mtcmess.sty 2006/03/14
tese.mtc0
english.mld 2006/01/13
english.mld 2006/01/13
bbm.sty 1999/03/15 V 1.2 provides fonts for set symbols - TH
verbatim.sty 2014/10/28 v1.5q LaTeX2e package for verbatim enhancements
hyperref.sty 2016/06/24 v6.83q Hypertext links for LaTeX
hobsub-hyperref.sty 2016/05/16 v1.14 Bundle oberdiek, subset hyperref (HO)
hobsub-generic.sty 2016/05/16 v1.14 Bundle oberdiek, subset generic (HO)
hobsub.sty 2016/05/16 v1.14 Construct package bundles (HO)
ifluatex.sty 2016/05/16 v1.4 Provides the ifluatex switch (HO)
ifvtex.sty 2016/05/16 v1.6 Detect VTeX and its facilities (HO)
intcalc.sty 2016/05/16 v1.2 Expandable calculations with integers (HO)
etexcmds.sty 2016/05/16 v1.6 Avoid name clashes with e-TeX commands (HO)
kvsetkeys.sty 2016/05/16 v1.17 Key value parser (HO)
kvdefinekeys.sty 2016/05/16 v1.4 Define keys (HO)
pdftexcmds.sty 2016/05/21 v0.22 Utility functions of pdfTeX for LuaTeX (HO)
pdfescape.sty 2016/05/16 v1.14 Implements pdfTeX's escape features (HO)
bigintcalc.sty 2016/05/16 v1.4 Expandable calculations on big integers (HO)
bitset.sty 2016/05/16 v1.2 Handle bit-vector datatype (HO)
uniquecounter.sty 2016/05/16 v1.3 Provide unlimited unique counter (HO)
letltxmacro.sty 2016/05/16 v1.5 Let assignment for LaTeX macros (HO)
hopatch.sty 2016/05/16 v1.3 Wrapper for package hooks (HO)
xcolor-patch.sty 2016/05/16 xcolor patch
atveryend.sty 2016/05/16 v1.9 Hooks at the very end of document (HO)
atbegshi.sty 2016/06/09 v1.18 At begin shipout hook (HO)
refcount.sty 2016/05/16 v3.5 Data extraction from label references (HO)
hycolor.sty 2016/05/16 v1.8 Color options for hyperref/bookmark (HO)
auxhook.sty 2016/05/16 v1.4 Hooks for auxiliary files (HO)
kvoptions.sty 2016/05/16 v3.12 Key value format for package options (HO)
pd1enc.def 2016/06/24 v6.83q Hyperref: PDFDocEncoding definition (HO)
hyperref.cfg 2002/06/06 v1.2 hyperref configuration of TeXLive
url.sty 2013/09/16 ver 3.4 Verb mode for urls, etc.
hpdftex.def 2016/06/24 v6.83q Hyperref driver for pdfTeX
rerunfilecheck.sty 2016/05/16 v1.8 Rerun checks for auxiliary files (HO)
float.sty 2001/11/08 v1.3d Float enhancements (AL)
00.symlist.sty 2008/03/11 v1.1 Symbol List package
00.Definitions/pagesetup.tex
geometry.sty 2010/09/12 v5.6 Page Geometry
geometry.cfg
fancyhdr.sty 2016/09/06 3.8 Extensive control of page headers and footers
t1phv.fd 2001/06/04 scalable font definitions for T1/phv.
supp-pdf.mkii
epstopdf-base.sty 2016/05/15 v2.6 Base part for package epstopdf
grfext.sty 2016/05/16 v1.2 Manage graphics extensions (HO)
nameref.sty 2016/05/21 v2.44 Cross-referencing by name of section
gettitlestring.sty 2016/05/16 v1.5 Cleanup title references (HO)
tese.out
tese.out
0.Inicio/1.cover.tex
Figures/Cover/istnewlogo.pdf
Figures/Cover/coverimage.jpg
0.Inicio/2.citation.tex
0.Inicio/3.Acknowledgments.tex
0.Inicio/4.Abstract.tex
0.Inicio/5.Keywords.tex
0.Inicio/4.Resumo.tex
0.Inicio/5.PalavrasChave.tex
0.Inicio/6.Tables.tex
umsa.fd 2013/01/14 v3.01 AMS symbols A
umsb.fd 2013/01/14 v3.01 AMS symbols B
ulasy.fd 1998/08/17 v2.2e LaTeX symbol font definitions
0.Inicio/7.Acronim.tex
0.Inicio/8.symbols.tex
1.Introduction/main.tex
t1pbk.fd 2001/06/04 font definitions for T1/pbk.
1.Introduction/1.motivation.tex
1.Introduction/2.state.tex
1.Introduction/3.contributions.tex
1.Introduction/4.outline.tex
2.Chapter/main.tex
2.Chapter/1.sectiona.tex
Figures/2.Chapter/dummy.pdf
2.Chapter/2.sectionb.tex
omsphv.fd
99.Conclusions/conclusions.tex
tese.bbl
Appendices/appendixA.tex
***********