我遇到了一个比较常见的"GLIBXX_3.4.15 not found"
错误。但就我而言,我看到了一些非常奇怪的事情。
通常错误出现如下形式:
/usr/lib/libstdc++.so.6: version 'GLIBCXX_3.4.15' not found
我的看起来像这样:
/opt/smrtanalysis/current/analysis/lib/libstdc++.so.6: version 'GLIBCXX_3.4.15' not found
许多解决方案(这里,这里, 或者这里)建议尝试一些方法apt-get -f install
来纠正它(或通过重新安装apt-get
),但是当我尝试运行 apt 时出现了这个错误。
我已将/usr/lib
、、、和添加到我的/usr/local/lib
,但仍然没有成功。/usr/lib/x86_64-linux-gnu
/usr/lib/i386-linux-gnu
LD_LIBRARY_PATH
最终,我发现了一个尝试使用dpkg --remove libstdc++6
并手动安装的建议,但这给了我这个错误:
dpkg: dependency problems prevent removal of libstdc++6:
...
insert long list of programs that depend on libstdc++6
...
dpkg: error processing libstdc++6 (--remove):
dependency problems - not removing
Errors were encountered while processing:
libstdc++6
因此我尝试从 .deb 重新安装,想着也许可以解决路径问题,结果得到了:
Preparing to replace libstdc++6 4.6.3-1ubuntu5 (using libstdc++6_4.6.3-1ubuntu5_amd64.deb) ...
Unpacking replacement libstdc++6 ...
dpkg: error processing libstdc++6 (--install):
libstdc++6:amd64 4.6.3-1ubuntu5 cannot be configured because libstdc++6:i386 is in a different version (4.8.1-2ubuntu1~12.04)
Errors were encountered while processing:
libstdc++6
所以我放弃了这个想法,而是locate libstdc++.so
创建一个新链接/usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.16
并将其复制到那里/opt/smrtanalysis/current/analysis/lib/
以替换错误的libstdc++.so.6
链接(保存旧链接,以防万一)。现在apt-get -f install
告诉我:
The following extra packages will be installed:
libstdc++6
The following packages will be upgraded:
libstdc++6
1 upgraded, 0 newly installed, 0 to remove and 111 not upgraded.
2 not fully installed or removed.
Need to get 0 B/326 kB of archives.
After this operation, 21.5 kB of additional disk space will be used.
Do you want to continue [Y/n]?
这看起来像是进步了,但是却y
得到了以下结果:
/usr/bin/perl: symbol lookup error: /opt/smrtanalysis/current/miscdeps/basesys/usr/lib64/perl5/5.8.8/x86_64-linux-thread-multi/auto/IO/IO.so: undefined symbol: Perl_Tstack_sp_ptr
(Reading database ... 210954 files and directories currently installed.)
Preparing to replace libstdc++6 4.6.3-1ubuntu5 (using .../libstdc++6_4.8.1-2ubuntu1~12.04_amd64.deb) ...
Unpacking replacement libstdc++6 ...
dpkg: error processing /var/cache/apt/archives/libstdc++6_4.8.1-2ubuntu1~12.04_amd64.deb (--unpack):
'./usr/share/doc/libstdc++6' is different from the same file on the system
Errors were encountered while processing:
/var/cache/apt/archives/libstdc++6_4.8.1-2ubuntu1~12.04_amd64.deb
E: Sub-process /usr/bin/dpkg returned an error code (1)
我不知道 smrtanalysis 在安装时做了什么,竟然对路径造成了如此大的干扰,也不知道如何让 apt 查看usr/libs
。有什么建议吗?
编辑
追溯依赖关系我发现了以下情况:
ldd /usr/bin/apt-get
linux-vdso.so.1 => (0x00007fff65c38000)
libapt-pkg.so.4.12 => /usr/lib/x86_64-linux-gnu/libapt-pkg.so.4.12 (0x00007fce5b5a6000)
libstdc++.so.6 => /opt/smrtanalysis/current/analysis/lib/libstdc++.so.6 (0x00007fce5b2a2000)
libgcc_s.so.1 => /opt/smrtanalysis/current/analysis/lib/libgcc_s.so.1 (0x00007fce5b08c000)
libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007fce5acae000)
libutil.so.1 => /opt/smrtanalysis/current/misclibs/sys-root/lib/libutil.so.1 (0x00007fce5aaab000)
libdl.so.2 => /lib/x86_64-linux-gnu/libdl.so.2 (0x00007fce5a8a7000)
libz.so.1 => /opt/smrtanalysis/current/common/lib/libz.so.1 (0x00007fce5a688000)
libm.so.6 => /opt/smrtanalysis/current/misclibs/sys-root/lib/libm.so.6 (0x00007fce5a405000)
/lib64/ld-linux-x86-64.so.2 (0x00007fce5b8d1000)
对于 PERL
ldd /usr/bin/perl
linux-vdso.so.1 => (0x00007fff707ff000)
libperl.so.5.14 => /usr/lib/libperl.so.5.14 (0x00007fbc3b501000)
libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007fbc3b142000)
libdl.so.2 => /lib/x86_64-linux-gnu/libdl.so.2 (0x00007fbc3af3e000)
libm.so.6 => /opt/smrtanalysis/current/misclibs/sys-root/lib/libm.so.6 (0x00007fbc3acba000)
libpthread.so.0 => /lib/x86_64-linux-gnu/libpthread.so.0 (0x00007fbc3aa9d000)
libcrypt.so.1 => /opt/smrtanalysis/current/misclibs/sys-root/lib/libcrypt.so.1 (0x00007fbc3a865000)
/lib64/ld-linux-x86-64.so.2 (0x00007fbc3b89f000)
关于如何撤消依赖性变化有什么想法吗?
答案1
我最终深入研究/etc/bash.bashrc
并注释掉了所有带有该内容的条目,/opt/smrtanalysis/...
然后一切恢复正常。