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无法安装 R 包“marmap”

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无法安装 R 包“marmap”

marmap我正在尝试在大学工作站上安装 R 包。我运行的是 Xubuntu LTS 14.04.5，内核版本 4.4.0-45，RStudio 版本 0.99.903 和 R 版本 3.3.1。安装marmap包时，出现大量信息，最后是

** R
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (igraph)
* installing *source* package ‘gdistance’ ...
** package ‘gdistance’ successfully unpacked and MD5 sums checked
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (gdistance)
ERROR: dependency ‘ncdf4’ is not available for package ‘marmap’
* removing ‘/home/francesc/R/x86_64-pc-linux-gnu-library/3.3/marmap’
Warning in install.packages :
  installation of package ‘marmap’ had non-zero exit status

在这里，我认为“非零退出状态”意味着它没有正确安装。因此，我ncdf4首先安装该软件包，结果却遇到了以下问题：

install.packages("ncdf4") Installing package into ‘/home/francesc/R/x86_64-pc-linux-gnu-library/3.3’ 
(as ‘lib’ is unspecified)
trying URL 'https://cran.rstudio.com/src/contrib/ncdf4_1.15.tar.gz'
Content type 'unknown' length 119570 bytes (116 KB)
==================================================
downloaded 116 KB

* installing *source* package ‘ncdf4’ ...
** package ‘ncdf4’ successfully unpacked and MD5 sums checked
configure.ac: starting
checking for nc-config... no
-----------------------------------------------------------------------------------
Error, nc-config not found or not executable.  This is a script that comes with the
netcdf library, version 4.1-beta2 or later, and must be present for configuration
to succeed.


If you installed the netcdf library (and nc-config) in a standard location, nc-config
should be found automatically.  Otherwise, you can specify the full path and name of
the nc-config script by passing the --with-nc-config=/full/path/nc-config argument
flag to the configure script.  For example:

./configure --with-nc-config=/sw/dist/netcdf4/bin/nc-config

Special note for R users:
-------------------------
To pass the configure flag to R, use something like this:

R CMD INSTALL --configure-args="--with-nc-config=/home/joe/bin/nc-config" ncdf4

where you should replace /home/joe/bin etc. with the location where you have
installed the nc-config script that came with the netcdf 4 distribution.
-----------------------------------------------------------------------------------
ERROR: configuration failed for package ‘ncdf4’
* removing ‘/home/francesc/R/x86_64-pc-linux-gnu-library/3.3/ncdf4’
Warning in install.packages :
  installation of package ‘ncdf4’ had non-zero exit status

The downloaded source packages are in
    ‘/tmp/RtmpC5Luhz/downloaded_packages

当我尝试在终端中运行建议的命令时：

R CMD INSTALL --configure-args="--with-nc-config=/home/francesc/bin/nc-config" ncdf4

答复如下：

~$ sudo R CMD INSTALL --configure-args="--with-nc-config=/home/francesc/bin/nc-config" ncdf4
[sudo] 密码：
警告：无效的包‘ncdf4’
错误：错误：未指定包

现在我有点不知所措，有人能给我指明正确的方向吗？非常感谢！

PS 本月初，我在命令行中找到并应用了一个超级简单的命令来安装 R 包，但我似乎找不到了。实际上是一个五个字的字符串，它可以从终端完美地安装 R 包。有没有一种简单的方法可以从命令行安装 R 包？

弗朗西斯克

答案1

ncdf4需要安装系统库，因此您有几个选择：

  1. ncdf4从存储库安装预构建的包：

    sudo apt-get install r-cran-ncdf4

    这将自动引入所需的系统依赖项。

  2. 或者，您可以明确安装系统依赖项：

    sudo apt-get install netcdf-bin

    然后，安装 R 包：

    > install.packages('ncdf4')

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