我正在将一篇大型论文上传到 arXiv，但上传失败，最后返回此错误：
Output written on finalv1.pdf (122 pages, 6984498 bytes).
Transcript written on finalv1.log.
[verbose]: LaTeX wrote a .toc, .lof, or .lot file - running extra passes
[verbose]: WARNING: Reached max number of passes, possibly failed to get CROSS-REFERENCES right.
[verbose]: Removing (La)TeX AUX file called 'finalv1.lot' (1477591907 >= 1477591878)
[verbose]: Removing (La)TeX AUX file called 'finalv1.out' (1477591907 >= 1477591878)
[verbose]: Removing (La)TeX AUX file called 'finalv1.toc' (1477591907 >= 1477591878)
[verbose]: Removing (La)TeX AUX file called 'finalv1.aux' (1477591907 >= 1477591878)
[verbose]: Removing (La)TeX AUX file called 'finalv1.lof' (1477591907 >= 1477591878)
[verbose]: now stamping pdf file 'finalv1.pdf' with stamp 'arXiv:submit/1704978 [math.PR] 27 Oct 2016'
[verbose]: stamped pdf file
[error]: missfont.log present.
*** AutoTeX ABORTING ***
[verbose]: AutoTeX returned error: missfont.log present.
[verbose]: $autotex->process failed $@: $?: 0 $!: Inappropriate ioctl for device
[verbose]: Error running AutoTeX process:
我认为这与 missfont.log 有关，该文件是在字体出现错误时创建的...但我没有使用任何不常见的字体。有什么方法可以解决这个问题吗？
完整输出信息：这里
我的电脑的比较输出：这里
并且没有 hyperref 错误：这里
注意：它可以在我的新安装 tex 的 ubuntu 电脑上完美编译，没有任何问题。
此外，文档序言如下
\documentclass[twoside,12pt]{report}
\usepackage{tikz}
\usepackage{cite}
\usepackage{url}
\usepackage{amsmath}
\usepackage{amssymb}
\usepackage{amsthm}
\usepackage{latexsym}
\usepackage{graphicx}
\usepackage{float}
\usepackage{epstopdf}
\usepackage{verbatim}
\usepackage[section]{placeins}
\usepackage{color}
\usepackage{calligra}
%\usepackage[T1]{fontenc}
\usepackage{lmodern}
\usepackage[utf8]{inputenc}
\usepackage[]{xcolor}
\usepackage{bm}
\usepackage{subcaption}
\usepackage{enumerate}
\usepackage[protrusion=true,expansion=true]{microtype}
\usepackage{fancyhdr}
\usepackage[hmarginratio=1:1,left=1.5in,right=1.5in]{geometry}
\usepackage[bottom]{footmisc}
\usepackage[pdfborder={0,0,0},pdfauthor={Alexander Kartun-Giles}, colorlinks=true,
linkcolor=blue, citecolor=blue]{hyperref}
\usepackage{setspace}
\usepackage{graphicx,amsfonts,amsmath,amssymb,amscd,bezier,amstext,makeidx,mathtools,xcolor,siunitx}
\usepackage{amsthm}
\usepackage{bm}
\usepackage{color}
\usepackage{latexsym}
\usepackage{graphicx}
\usepackage{longtable}
\usepackage{rotating}
\usepackage{tikz}
\usepackage[toc,page]{appendix}
\raggedbottom
%\doublespacing
\onehalfspacing
\definecolor{apricot}{RGB}{253, 213, 177}
\newcommand{\bi}{\boldsymbol{i}}
\newcommand{\bj}{\boldsymbol{j}}
\renewcommand{\thepart}{\Alph{part}}
\renewcommand{\theequation}{\thechapter.\arabic{equation}}
\renewcommand{\thefigure}{\thechapter.\arabic{figure}}
\renewcommand{\thetable}{\thechapter.\arabic{table}}
\renewcommand{\thefootnote}{\arabic{footnote}}
\newcommand{\RR}{\mathbb{R}}
\newcommand{\QQ}{\mathbb{Q}}
\newcommand{\CC}{\mathbb{C}}
\newcommand{\NN}{\mathbb{N}}
\newcommand{\ZZ}{\mathbb{Z}}
\newcommand{\EE}{\mathbb{E}}
\newcommand{\FF}{\mathbb{F}}
\newcommand{\F}{{\cal{F}}}
\newcommand{\sym}{\mbox{sym}}
\newcommand{\modd}{\text{~mod~}}
\newcommand{\RRe}{\text{Re}}
\newcommand{\IIm}{\text{Im}}
\newcommand{\Neff}{N_{\rm eff}}
\newcommand{\FDelta}{{\cal{F}}_{\Delta}}
\newcommand{\FD}{{\cal{F}}_{D}}
\newcommand{\FE}{{\cal{F}}_{E}}
\newcommand{\FDp}{{\cal{F}}_D^+}
\newcommand{\FDm}{{\cal{F}}_D^-}
\newcommand*{\reff}[1]{(\ref{#1})}
\DeclarePairedDelimiter\norm{\lVert}{\rVert}
\DeclarePairedDelimiter\singlenorm{|}{|}
\DeclareMathOperator*{\argmin}{arg\,min}
\DeclareMathOperator*{\argmax}{arg\,max}
\providecommand{\floor}[1]{\left \lfloor #1 \right \rfloor }
\providecommand{\ceil}[1]{\left \lceil #1 \right \rceil }
\providecommand{\ex}[1]{\mathbb{E}\left( #1 \right)}
\DeclareMathOperator{\sech}{sech}
\DeclareMathOperator{\csch}{csch}
\DeclareMathOperator{\arcsec}{arcsec}
\DeclareMathOperator{\arccot}{arccot}
\DeclareMathOperator{\arccsc}{arccsc}
\DeclareMathOperator{\arccosh}{arcosh}
\DeclareMathOperator{\arcsinh}{arcsinh}
%\DeclareMathOperator{\arccos}{arccos}
%\DeclareMathOperator{\arcsin}{arcsin}
\DeclareMathOperator{\arctanh}{arctanh}
\DeclareMathOperator{\arcsech}{arcsech}
\DeclareMathOperator{\arccsch}{arcsch}
\DeclareMathOperator{\arccoth}{arcoth}
\newtheorem{lemma}{Lemma}
\newtheorem{theorem}[lemma]{Theorem}
\newtheorem{proposition}[lemma]{Proposition}
\newtheorem{identity}[lemma]{Identity}
\newtheorem{remark}[lemma]{Remark}
\newtheorem{conjecture}[lemma]{Conjecture}
\numberwithin{equation}{section} \numberwithin{lemma}{section}
\newenvironment{example}[1][Example]{\begin{trivlist}
\item[\hskip \labelsep {\bfseries #1}]}{\end{trivlist}}
\makeatletter
\newcommand{\contraction}[5][1ex]{%
\mathchoice
{\contraction@\displaystyle{#2}{#3}{#4}{#5}{#1}}%
{\contraction@\textstyle{#2}{#3}{#4}{#5}{#1}}%
{\contraction@\scriptstyle{#2}{#3}{#4}{#5}{#1}}%
{\contraction@\scriptscriptstyle{#2}{#3}{#4}{#5}{#1}}}%
\newcommand{\contraction@}[6]{%
\setbox0=\hbox{$#1#2$}%
\setbox2=\hbox{$#1#3$}%
\setbox4=\hbox{$#1#4$}%
\setbox6=\hbox{$#1#5$}%
\dimen0=\wd2%
\advance\dimen0 by \wd6%
\divide\dimen0 by 2%
\advance\dimen0 by \wd4%
\vbox{%
\hbox to 0pt{%
\kern \wd0%
\kern 0.5\wd2%
\contraction@@{\dimen0}{#6}%
\hss}%
\vskip 0.2ex%
\vskip\ht2}}
\newcommand{\contracted}[5][1ex]{%
\contraction[#1]{#2}{#3}{#4}{#5}\ensuremath{#2#3#4#5}}
\newcommand{\contraction@@}[3][0.06em]{%
\hbox{%
\vrule width #1 height 0pt depth #3%
\vrule width #2 height 0pt depth #1%
\vrule width #1 height 0pt depth #3%
\relax}}
\newcommand{\ch}{}
\newcommand{\Vk}{V}
\definecolor{deepred}{RGB}{209,34,80}
\definecolor{darkgreen}{RGB}{18,194,15}
\definecolor{amber}{RGB}{222,194,13}
\definecolor{darkergreen}{RGB}{0,133,0}
\definecolor{betagreen}{RGB}{128,255,128}
\definecolor{hotpink}{RGB}{85,26,139}
\fancyhf{}
\cfoot{\thepage}
\pagestyle{fancy}
\linespread{1.15}
\begin{document}