我一直尝试在 UBUNTU 中使用这段代码:
wget https://snpeff.blob.core.windows.net/versions/snpEff_latest_core.z
unzip snpEff_latest_core.zip
java -Xmx8g -jar snpEff.jar GRCh37.75 data_1.vcf > test.chr22.ann.vcf
直到出现 java 命令之前,它都运行良好。
Command 'java' not found, but can be installed with:
sudo apt install openjdk-11-jre-headless # version 11.0.16+8-0ubuntu1~22.04, or
sudo apt install default-jre # version 2:1.11-72build2
sudo apt install openjdk-17-jre-headless # version 17.0.3+7-0ubuntu0.22.04.1
sudo apt install openjdk-18-jre-headless # version 18~36ea-1
sudo apt install openjdk-8-jre-headless # version 8u312-b07-0ubuntu1
我尝试了上面列出的所有选项,但都失败了:
Err:1 http://archive.ubuntu.com/ubuntu jammy-updates/main amd64 alsa-ucm-conf all 1.2.6.3-1ubuntu1.1
404 Not Found
Ign:2 http://archive.ubuntu.com/ubuntu jammy-updates/main amd64 openjdk-11-jre-headless amd64 11.0.16+8-0ubuntu1~22.04
Err:2 http://security.ubuntu.com/ubuntu jammy-updates/main amd64 openjdk-11-jre-headless amd64 11.0.16+8-0ubuntu1~22.04
404 Not Found
E: Failed to fetch http://archive.ubuntu.com/ubuntu/pool/main/a/alsa-ucm-conf/alsa-ucm-conf_1.2.6.3-1ubuntu1.1_all.deb 404 Not Found [IP: 185.125.190.36 80]
E: Failed to fetch http://security.ubuntu.com/ubuntu/pool/main/o/openjdk-lts/openjdk-11-jre-headless_11.0.16%2b8-0ubuntu1%7e22.04_amd64.deb 404 Not Found
E: Unable to fetch some archives, maybe run apt-get update or try with --fix-missing?
有什么方法可以解决这个问题,以便我可以使用代码吗?谢谢:)