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Circos 融入工作流程

tag-icon • tag-icon bash python
Circos 融入工作流程

我正在尝试使用 Snakemake 框架中实现的 proteny 工具。我从示例开始，但无法运行。这是我得到的错误。

*File "/root/mambaforge/envs/snakemake/bin/snakemake", line 10, in <module>
    sys.exit(main())
             ^^^^^^
  File "/root/mambaforge/envs/snakemake/lib/python3.11/site-packages/snakemake/__init__.py", line 3030, in main
    success = snakemake(
              ^^^^^^^^^^
  File "/root/mambaforge/envs/snakemake/lib/python3.11/site-packages/snakemake/__init__.py", line 554, in snakemake
    update_config(overwrite_config, load_configfile(f))
                                    ^^^^^^^^^^^^^^^^^^
  File "/root/mambaforge/envs/snakemake/lib/python3.11/site-packages/snakemake/io.py", line 1715, in load_configfile
    config = _load_configfile(configpath)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/root/mambaforge/envs/snakemake/lib/python3.11/site-packages/snakemake/io.py", line 1689, in _load_configfile
    obj = open(configpath_or_obj, encoding="utf-8")
          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
FileNotFoundError: [Errno 2] No such file or directory: 'circos'*

我很确定 circos 安装在主目录中。我甚至将 circos PATH 放入了 bashrc 文件中，但问题仍然存在。Mambaforge、conda 和 Snakemake 已更新。

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