将附录作为 LOF 和 LOT 中的一章，并将 lof 和 lot 中的章节格式包括在内

Question

您缺少hyperref定义的锚行\apptocmd{\@chapter}，由以下人员完成：

\global\let\thischapterHref\@currentHref

用以下定义替换您的定义：

\apptocmd{\@chapter}{%
    \gdef\thischaptertitle{#1}%
    \gdef\thischapternumber{\thechapter}%
    \global\let\thischapterHref\@currentHref % hyperref
    \global\toggletrue{noFigs}%
    \global\toggletrue{noTabss}%
}{}{}

而且列单的时候还要呼唤主播：

\AtBeginDocument{%
    \AtBeginEnvironment{table}{%
        \iftoggle{noTabs}{
            \addtocontents{lot}{\protect\contentsline{chapter}%
                {\protect\numberline {\thischapternumber} {\thischaptertitle}}%
                {}%
                {\thischapterHref}% << for hyperlink
                }
            \global\togglefalse{noTabs}
        }{}
    }%
}

此外，抑制目录条目上的页码添加\addtocontents您应该使用下面的代码，而不是\addcontentsline{lot}{chapter}{Anexo}，其中最后一个参数chapter\thepage指的是hyperref的链接锚点：

\addtocontents{lot}{\protect\contentsline{chapter}{Anexo}{}{chapter\thepage}}

完整的(M)WE：

\documentclass[11pt,a4paper,twoside,openright]{report}
\usepackage[spanish,es-lcroman]{babel}
\addto\shorthandsspanish{\spanishdeactivate{~<>}}

\usepackage[utf8x]{inputenc}
\usepackage{microtype}
\usepackage[T1]{fontenc}
\usepackage{lmodern}

\usepackage{booktabs}
\usepackage{caption}
\captionsetup{labelfont=bf}
\usepackage{amsmath}

\usepackage{etoolbox}

\makeatletter 
% initial definitions of the chapter info (name and number)
\def\thischaptertitle{}\def\thischapternumber{}
\newtoggle{noFigs}
\newtoggle{noTabs}

\apptocmd{\@chapter}{%
    \gdef\thischaptertitle{#1}%
    \gdef\thischapternumber{\thechapter}%
    \global\let\thischapterHref\@currentHref % hyperref
    \global\toggletrue{noFigs}%
    \global\toggletrue{noTabs}%
}{}{}


% the figure environment does the job: the first time it is used after a \chapter command, 
% it writes the information of the chapter to the LoF
\AtBeginDocument{%
    \AtBeginEnvironment{figure}{%
        \iftoggle{noFigs}{
            \addtocontents{lof}{%
                \protect\contentsline{chapter}%
                {\protect\numberline {\thischapternumber} {\thischaptertitle}}{}{\thischapterHref} }
            \global\togglefalse{noFigs}
        }{}
    }%
}

% the figure environment does the job: the first time it is used after a \chapter command, 
% it writes the information of the chapter to the LoF
\AtBeginDocument{%
    \AtBeginEnvironment{table}{%
        \iftoggle{noTabs}{
            \addtocontents{lot}{\protect\contentsline {chapter}%
                {\protect\numberline {\thischapternumber} {\thischaptertitle}}{}{\thischapterHref} }
            \global\togglefalse{noTabs}
        }{}
    }%
}
\makeatother

\addto\captionsspanish{
    \def\tablename{Tabla}
    \def\listtablename{\'Indice de tablas}
}


\usepackage[margin=25mm,inner=30mm]{geometry}


\usepackage[colorlinks=true,
            linkcolor=blue,
            urlcolor=blue,
            citecolor=blue]{hyperref}

\usepackage{sectsty}
\usepackage[nottoc,notlof,notlot]{tocbibind} 

\makeatletter
\def\tableofcontents{%
    \newpage
    \centerline{\Large\scshape Índice General} 
    \vspace*{0.3in}
    \@mkboth{Contenidos}{}
    \@starttoc{toc}
}

\def\listoftables{%
    \newpage
    \centerline{\Large\scshape Índice de Tablas} 
    \vspace*{0.3in}
    \@mkboth{Contenidos}{}
    \@starttoc{lot}
}

\def\listoffigures{%
    \newpage
    \centerline{\Large\scshape Índice de Figuras} 
    \vspace*{0.3in}
    \@mkboth{Contenidos}{}
    \@starttoc{lof}
}
\makeatother


\usepackage{appendix}
\usepackage{titlesec}
\usepackage[dotinlabels]{titletoc}

\usepackage{longtable}
\usepackage{tabularx}
\usepackage{bigstrut}
\usepackage{bigdelim}
\usepackage{ltxtable}
\usepackage{chngcntr}

\begin{document}
    \selectlanguage{spanish}

    %------------------------- TOC.

    \cleardoublepage
    \phantomsection
    \tableofcontents
    \addcontentsline{toc}{chapter}{Índice General}

    %------------------------- LOF.

    \cleardoublepage
    \phantomsection
    \listoffigures
    \addcontentsline{toc}{chapter}{\listfigurename}

    %------------------------- LOT.

    \cleardoublepage
    \phantomsection
    \listoftables
    \addcontentsline{toc}{chapter}{\listtablename}

    \clearpage
    \chapter{Capítulo 1}
    % There are no tables here...

    \clearpage
    \chapter{Estado del Arte}

    \begin{table}[h!]
        \centering
        \caption{Grupos de códigos de área.}\label{tab:1}
        \begin{tabular}{cc}
            \toprule
            hola & chao\\
            \midrule
            bla & blabla\\
            alb & albalb\\
            \bottomrule
        \end{tabular}
    \end{table}
    %and many other tables...
    \clearpage
    \chapter{Métodos y materiales}

    \begin{table}[h!]
        \centering
        \begin{tabular}{lc}
            \toprule
            \multicolumn{2}{c}{\textbf{CARACTERÍSTICAS TÉCNICAS DEL ESPECTRÓMETRO STS-NIR }} \\
            \midrule
            Fabricante & OceanOptics \\
            bla & blabla\\
            \bottomrule
        \end{tabular}%
        \caption{Características del espectrómetro y de la fibra óptica.}\label{tab:car_espectrometro}%
    \end{table}

    % Here's much more... (bla bla... + bibliography...)
    % And at the end (the appendix):

    \clearpage
    \renewcommand{\appendixname}{Anexo}
    \renewcommand{\appendixtocname}{Anexo}
    \renewcommand{\appendixpagename}{Anexo}
    \renewcommand{\thesection}{\Alph{section}}

    \appendix       
    \phantomsection
    \addtocontents{lot}{\protect\contentsline{chapter}{Anexo}{}{chapter\thepage}}
    \clearpage
    \addappheadtotoc
    \appendixpage

    \counterwithin{table}{section}
    \counterwithin{figure}{section}
    \counterwithin{equation}{section}


    \refstepcounter{section}% 
    \section*{\thesection. \quad Características generales de las agujas y conos de pino.}

    \begin{table}[h!]
        \centering
        \begin{tabular}{lcc}
            \toprule
            & bla & blabla \\
            \midrule
            Moisture (wt.\%) & 12     & 8,9 \\
            bla bla          & bla    & bla \\
            \bottomrule
        \end{tabular}%
        \caption{Características generales de agujas y conos de pino.}
    \end{table}%

\end{document}

结果，您以超链接的形式获得了所有章节：

Answer 1