mohammad@abbasi ~/NGS/Data/RESULTS/TR
$ java -jar ~/NGS/programs/Trimmomatic-0.39/trimmomatic-0.39.jar PE DRR000001_1.fastq DRR000001_2.fastq -baseout GgG.fastq HEADCROP:15 LEADING:30 TRAILING:30 MINLEN:50; done
-bash: syntax error near unexpected token `done'
(base)
答案1
你的行以 , 结尾; done
,done
是结束循环的 shell 语法 ( for
, while
, until
),但你永远不会启动任何循环。 shell 在到达时会感到困惑,done
因为它不知道要终止哪个循环。